Overview

  • Principal Investigator:
  • Researcher:
  • Experiment:

## converting counts to integer mode
## estimating size factors
## estimating dispersions
## gene-wise dispersion estimates
## mean-dispersion relationship
## final dispersion estimates
## fitting model and testing
## Saving dds.rda, rld.rda to /Users/travis/build/hbc/bcbio_rnaseq_output_example/report/data

Plots

Mean average (MA)

An MA plot compares transformed counts on M (log ratio) and A (mean average) scales (Yang et al. 2002).